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Commit 50ac8cfd authored by William G. Tresselt's avatar William G. Tresselt
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Resolved merge conflict

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...@@ -10,7 +10,8 @@ channels = ['Fp1', 'Fz', 'F3', 'F7', 'F9', 'FC5', 'FC1', 'C3', 'T7', 'CP5', 'CP1 ...@@ -10,7 +10,8 @@ channels = ['Fp1', 'Fz', 'F3', 'F7', 'F9', 'FC5', 'FC1', 'C3', 'T7', 'CP5', 'CP1
, 'P9', 'O1', 'Oz', 'O2', 'P10', 'P8', 'P4', 'CP2', 'CP6', 'T8', 'C4', 'Cz' , 'P9', 'O1', 'Oz', 'O2', 'P10', 'P8', 'P4', 'CP2', 'CP6', 'T8', 'C4', 'Cz'
, 'FC2', 'FC6', 'F10', 'F8', 'F4', 'Fp2', 'ACC_X', 'ACC_Y', 'ACC_Z'] , 'FC2', 'FC6', 'F10', 'F8', 'F4', 'Fp2', 'ACC_X', 'ACC_Y', 'ACC_Z']
removed_channels = ['Fp1', 'F8', 'F7', 'Fp2', 'F3', 'F4'] removed_channels = ['Fp1', 'F8', 'F7', 'Fp2', 'F3', 'F4']
frequencies_main = [4,5,6,7,9,11] #frequencies_main = [4,5,6,7,9,11]
frequencies_main = [4,5,5.5,6,7,7.4]
frequencies = ['8.18_sin_h1','8.18_cos_h1','8.18_sin_h2','8.18_cos_h2','8.18_sin_h3','8.18_cos_h3', frequencies = ['8.18_sin_h1','8.18_cos_h1','8.18_sin_h2','8.18_cos_h2','8.18_sin_h3','8.18_cos_h3',
'9_sin_h1', '9_cos_h1','9_sin_h2', '9_cos_h2','9_sin_h3', '9_cos_h3', '9_sin_h1', '9_cos_h1','9_sin_h2', '9_cos_h2','9_sin_h3', '9_cos_h3',
'10_sin_h1','10_cos_h1','10_sin_h2','10_cos_h2','10_sin_h3','10_cos_h3', '10_sin_h1','10_cos_h1','10_sin_h2','10_cos_h2','10_sin_h3','10_cos_h3',
...@@ -110,6 +111,7 @@ inlet_2 = StreamInlet(streams_eeg[0]) ...@@ -110,6 +111,7 @@ inlet_2 = StreamInlet(streams_eeg[0])
fs = 250 # Sampling frequency fs = 250 # Sampling frequency
delay = 0.061 delay = 0.061
fragment_duration = 4+delay # Fragment duration in seconds fragment_duration = 4+delay # Fragment duration in seconds
print(fragment_duration) print(fragment_duration)
fragment_samples = round(fs * fragment_duration) fragment_samples = round(fs * fragment_duration)
...@@ -176,6 +178,7 @@ while True: ...@@ -176,6 +178,7 @@ while True:
X_c, Y_c = ca.transform(X, Y) X_c, Y_c = ca.transform(X, Y)
# Uses two coefficients pk = sqrt(p1**2+p2*'2) # Uses two coefficients pk = sqrt(p1**2+p2*'2)
p1 = np.corrcoef(X_c[:, 0], Y_c[:, 0])[0][1] p1 = np.corrcoef(X_c[:, 0], Y_c[:, 0])[0][1]
#freqs.append(p1)
p2 = np.corrcoef(X_c[:, 1], Y_c[:, 1])[0][1] p2 = np.corrcoef(X_c[:, 1], Y_c[:, 1])[0][1]
freqs.append(np.sqrt(p1 ** 2 + p2 ** 2)) freqs.append(np.sqrt(p1 ** 2 + p2 ** 2))
cca = freqs cca = freqs
......
...@@ -15,7 +15,8 @@ channels = ['Fp1', 'Fz', 'F3', 'F7', 'F9', 'FC5', 'FC1', 'C3', 'T7', 'CP5', 'CP1 ...@@ -15,7 +15,8 @@ channels = ['Fp1', 'Fz', 'F3', 'F7', 'F9', 'FC5', 'FC1', 'C3', 'T7', 'CP5', 'CP1
removed_channels = ['Fp1', 'F8', 'F7', 'Fp2', 'F3', 'F4'] removed_channels = ['Fp1', 'F8', 'F7', 'Fp2', 'F3', 'F4']
#The frequencies used for the SSVEP speller #The frequencies used for the SSVEP speller
frequencies_main = [4,5,6,7,9,11] #frequencies_main = [4,5,6,7,9,11]
frequencies_main = [4,5,5.5,6,7,7.4]
#The channels used for the BCI Speller combined with CCA #The channels used for the BCI Speller combined with CCA
occ_channels = ['O1', 'O2', 'Oz', 'P3', 'P4', 'Pz', 'P7', 'P8'] occ_channels = ['O1', 'O2', 'Oz', 'P3', 'P4', 'Pz', 'P7', 'P8']
...@@ -190,6 +191,7 @@ inlet_2 = StreamInlet(streams_eeg[0])# LSL EEG data ...@@ -190,6 +191,7 @@ inlet_2 = StreamInlet(streams_eeg[0])# LSL EEG data
fs = 250 # Sampling frequency fs = 250 # Sampling frequency
delay = 0.061 #Occular delay delay = 0.061 #Occular delay
fragment_duration = 4+delay # Fragment duration in seconds fragment_duration = 4+delay # Fragment duration in seconds
fragment_samples = round(fs * fragment_duration) fragment_samples = round(fs * fragment_duration)
...@@ -269,6 +271,7 @@ while True: ...@@ -269,6 +271,7 @@ while True:
X_c, Y_c = ca.transform(X, Y) X_c, Y_c = ca.transform(X, Y)
# Uses two coefficients pk = sqrt(p1**2+p2*'2) # Uses two coefficients pk = sqrt(p1**2+p2*'2)
p1 = np.corrcoef(X_c[:, 0], Y_c[:, 0])[0][1] p1 = np.corrcoef(X_c[:, 0], Y_c[:, 0])[0][1]
#freqs.append(p1)
p2 = np.corrcoef(X_c[:, 1], Y_c[:, 1])[0][1] p2 = np.corrcoef(X_c[:, 1], Y_c[:, 1])[0][1]
freqs.append(np.sqrt(p1 ** 2 + p2 ** 2)) freqs.append(np.sqrt(p1 ** 2 + p2 ** 2))
cca = freqs cca = freqs
......
<?xml version='1.0' encoding='utf-8'?> <?xml version='1.0' encoding='utf-8'?>
<scheme description="" title="EEGAndEyeTracker" version="2.0"> <scheme description="" title="EEGAndEyeTracker" version="2.0">
<nodes> <nodes>
<node id="0" name="LSL Input" position="(595.0, 368.0)" project_name="NeuroPype" qualified_name="widgets.network.owlslinput.OWLSLInput" title="EyeTrackerStream" uuid="ddff5e58-7c8b-4abb-9866-4cda5e4f0dff" version="1.5.1" /> <node id="0" name="LSL Input" position="(595.0, 368.0)" project_name="NeuroPype" qualified_name="widgets.network.owlslinput.OWLSLInput" title="EyeTrackerStream" uuid="48b946bb-5102-4912-9592-c56bbaa745e8" version="1.5.1" />
<node id="1" name="Select Range" position="(1077.0, 448.0)" project_name="NeuroPype" qualified_name="widgets.tensor_math.owselectrange.OWSelectRange" title="Blinking Data" uuid="3c5d5583-86ea-4aa7-814b-9b18799bd870" version="1.1.0" /> <node id="1" name="Select Range" position="(1077.0, 448.0)" project_name="NeuroPype" qualified_name="widgets.tensor_math.owselectrange.OWSelectRange" title="Blinking Data" uuid="1f5fd4a4-6b47-4505-98ed-235dbfdb1242" version="1.1.0" />
<node id="2" name="LSL Input" position="(615.0, 888.0)" project_name="NeuroPype" qualified_name="widgets.network.owlslinput.OWLSLInput" title="EEG" uuid="509ce87b-77d8-480d-ba21-67edad6c497e" version="1.5.1" /> <node id="2" name="LSL Input" position="(615.0, 888.0)" project_name="NeuroPype" qualified_name="widgets.network.owlslinput.OWLSLInput" title="EEG" uuid="80c08671-e35f-4de8-b3f7-af3f26b607a0" version="1.5.1" />
<node id="3" name="Dejitter Timestamps" position="(815.0, 888.0)" project_name="NeuroPype" qualified_name="widgets.utilities.owdejittertimestamps.OWDejitterTimestamps" title="Dejitter Timestamps" uuid="05e68c74-13ba-4f11-8f68-d00647996c7d" version="1.0.0" /> <node id="3" name="Dejitter Timestamps" position="(815.0, 888.0)" project_name="NeuroPype" qualified_name="widgets.utilities.owdejittertimestamps.OWDejitterTimestamps" title="Dejitter Timestamps" uuid="0f127e5e-480f-493f-816d-d7470bb9b638" version="1.0.0" />
<node id="4" name="Record to XDF" position="(829.0, 528.0)" project_name="NeuroPype" qualified_name="widgets.file_system.owrecordtoxdf.OWRecordToXDF" title="Record to XDF" uuid="acb44b04-12cf-4f63-b7ba-24a6d4319cbb" version="1.4.0" /> <node id="4" name="Record to XDF" position="(829.0, 528.0)" project_name="NeuroPype" qualified_name="widgets.file_system.owrecordtoxdf.OWRecordToXDF" title="Record to XDF" uuid="847c7840-a7b8-4914-9d98-648bea461c4b" version="1.4.0" />
<node id="5" name="Record to XDF" position="(715.0, 1088.0)" project_name="NeuroPype" qualified_name="widgets.file_system.owrecordtoxdf.OWRecordToXDF" title="Record to XDF (1)" uuid="ea7b1ce9-144b-481d-8936-bef1af7bc181" version="1.4.0" /> <node id="5" name="Record to XDF" position="(715.0, 1088.0)" project_name="NeuroPype" qualified_name="widgets.file_system.owrecordtoxdf.OWRecordToXDF" title="Record to XDF (1)" uuid="36663dcb-2c5f-45fb-bad3-04c331341de6" version="1.4.0" />
<node id="6" name="Time Series Plot" position="(1243.0, 446.0)" project_name="NeuroPype" qualified_name="widgets.visualization.owtimeseriesplot.OWTimeSeriesPlot" title="Time Series Plot (2)" uuid="6dc03f1e-1d5c-433f-bb26-3aa177107bb7" version="1.1.0" /> <node id="6" name="Time Series Plot" position="(1243.0, 446.0)" project_name="NeuroPype" qualified_name="widgets.visualization.owtimeseriesplot.OWTimeSeriesPlot" title="Time Series Plot (2)" uuid="2ac07903-770a-437b-b821-86c4c995fd0d" version="1.1.0" />
<node id="7" name="Dejitter Timestamps" position="(825.0, 359.0)" project_name="NeuroPype" qualified_name="widgets.utilities.owdejittertimestamps.OWDejitterTimestamps" title="Dejitter Timestamps (2)" uuid="4d11b86f-60e0-4f94-9d73-dfd81cf05ea6" version="1.0.0" /> <node id="7" name="Dejitter Timestamps" position="(825.0, 359.0)" project_name="NeuroPype" qualified_name="widgets.utilities.owdejittertimestamps.OWDejitterTimestamps" title="Dejitter Timestamps (2)" uuid="ba6fba06-6dd4-452a-bbd1-33ac0fd32337" version="1.0.0" />
<node id="8" name="Record to XDF" position="(615.0, 1088.0)" project_name="NeuroPype" qualified_name="widgets.file_system.owrecordtoxdf.OWRecordToXDF" title="Record to XDF (5)" uuid="faa5f5c8-26cb-41ca-b953-46e4c2d19338" version="1.4.0" /> <node id="8" name="Record to XDF" position="(615.0, 1088.0)" project_name="NeuroPype" qualified_name="widgets.file_system.owrecordtoxdf.OWRecordToXDF" title="Record to XDF (5)" uuid="84a7754e-d9b2-4b7f-84e1-593acc648480" version="1.4.0" />
<node id="9" name="Record to XDF" position="(729.0, 528.0)" project_name="NeuroPype" qualified_name="widgets.file_system.owrecordtoxdf.OWRecordToXDF" title="Record to XDF (7)" uuid="822dc471-b53c-4fe8-aa5b-46e0142c15ce" version="1.4.0" /> <node id="9" name="Record to XDF" position="(729.0, 528.0)" project_name="NeuroPype" qualified_name="widgets.file_system.owrecordtoxdf.OWRecordToXDF" title="Record to XDF (7)" uuid="4987a0d4-4c7e-4184-bfe2-a0a279f441a4" version="1.4.0" />
<node id="10" name="Constant String" position="(100, 700)" project_name="NeuroPype" qualified_name="widgets.programming.owconstantstring.OWConstantString" title="Constant String" uuid="66a84109-b822-40ff-b693-86d798a1de90" version="1.0.0" /> <node id="10" name="Constant String" position="(100, 700)" project_name="NeuroPype" qualified_name="widgets.programming.owconstantstring.OWConstantString" title="Constant String" uuid="7a60007b-0dee-4a24-b756-c87cc54bb19f" version="1.0.0" />
<node id="11" name="IIR Filter" position="(1029.0, 890.0)" project_name="NeuroPype" qualified_name="widgets.signal_processing.owiirfilter.OWIIRFilter" title="IIR Filter (1)" uuid="2d038d0c-9d2a-44f5-ad91-e02ea46323ee" version="1.1.0" /> <node id="11" name="IIR Filter" position="(1042.0, 885.0)" project_name="NeuroPype" qualified_name="widgets.signal_processing.owiirfilter.OWIIRFilter" title="IIR Filter (1)" uuid="be7540a9-b2c8-47a7-b02b-fc97d1970d4c" version="1.1.0" />
<node id="12" name="Record to XDF" position="(1200.0, 883.0)" project_name="NeuroPype" qualified_name="widgets.file_system.owrecordtoxdf.OWRecordToXDF" title="Record to XDF (6)" uuid="727cbe5a-5841-4d0c-a8ab-20e40833e4c9" version="1.4.0" /> <node id="12" name="Record to XDF" position="(1200.0, 883.0)" project_name="NeuroPype" qualified_name="widgets.file_system.owrecordtoxdf.OWRecordToXDF" title="Record to XDF (6)" uuid="d810da39-73a2-4c52-b54b-d99129a90140" version="1.4.0" />
<node id="13" name="Decimate" position="(932.0, 884.0)" project_name="NeuroPype" qualified_name="widgets.signal_processing.owdecimate.OWDecimate" title="Decimate" uuid="d1704ca9-79cb-4105-b562-3caa4391c403" version="1.0.1" />
<node id="14" name="Record to XDF" position="(1011.0, 1019.0)" project_name="NeuroPype" qualified_name="widgets.file_system.owrecordtoxdf.OWRecordToXDF" title="Record to XDF (1)" uuid="1be502fb-af73-4c38-bc17-5920f7714f08" version="1.4.0" />
</nodes> </nodes>
<links> <links>
<link enabled="true" id="0" sink_channel="Data" sink_node_id="3" source_channel="Data" source_node_id="2" /> <link enabled="true" id="0" sink_channel="Data" sink_node_id="3" source_channel="Data" source_node_id="2" />
...@@ -28,15 +30,19 @@ ...@@ -28,15 +30,19 @@
<link enabled="true" id="9" sink_channel="Output Root" sink_node_id="9" source_channel="Data" source_node_id="10" /> <link enabled="true" id="9" sink_channel="Output Root" sink_node_id="9" source_channel="Data" source_node_id="10" />
<link enabled="true" id="10" sink_channel="Output Root" sink_node_id="5" source_channel="Data" source_node_id="10" /> <link enabled="true" id="10" sink_channel="Output Root" sink_node_id="5" source_channel="Data" source_node_id="10" />
<link enabled="true" id="11" sink_channel="Output Root" sink_node_id="8" source_channel="Data" source_node_id="10" /> <link enabled="true" id="11" sink_channel="Output Root" sink_node_id="8" source_channel="Data" source_node_id="10" />
<link enabled="true" id="12" sink_channel="Data" sink_node_id="11" source_channel="Data" source_node_id="3" /> <link enabled="true" id="12" sink_channel="Output Root" sink_node_id="12" source_channel="Data" source_node_id="10" />
<link enabled="true" id="13" sink_channel="Output Root" sink_node_id="12" source_channel="Data" source_node_id="10" /> <link enabled="true" id="13" sink_channel="Data" sink_node_id="12" source_channel="Data" source_node_id="11" />
<link enabled="true" id="14" sink_channel="Data" sink_node_id="12" source_channel="Data" source_node_id="11" /> <link enabled="true" id="14" sink_channel="Data" sink_node_id="13" source_channel="Data" source_node_id="3" />
<link enabled="true" id="15" sink_channel="Data" sink_node_id="11" source_channel="Data" source_node_id="13" />
<link enabled="true" id="16" sink_channel="Data" sink_node_id="14" source_channel="Data" source_node_id="13" />
<link enabled="true" id="17" sink_channel="Output Root" sink_node_id="14" source_channel="Data" source_node_id="10" />
</links> </links>
<annotations> <annotations>
<text font-family="Helvetica" font-size="16" id="0" rect="(499.0, 805.0, 244.0, 62.0)">LSL stream for EEG and cleaning up data.</text> <text font-family="Helvetica" font-size="16" id="0" rect="(499.0, 805.0, 244.0, 62.0)">LSL stream for EEG and cleaning up data.</text>
<text font-family="Helvetica" font-size="16" id="1" rect="(535.0, 247.0, 198.0, 50.0)">LSL stream for eye tracking and blinking.</text> <text font-family="Helvetica" font-size="16" id="1" rect="(535.0, 247.0, 198.0, 50.0)">LSL stream for eye tracking and blinking.</text>
<text font-family="Helvetica" font-size="16" id="2" rect="(13.0, 643.0, 252.0, 83.0)">String containing root for recordings</text> <text font-family="Helvetica" font-size="16" id="2" rect="(13.0, 643.0, 252.0, 83.0)">String containing root for recordings</text>
<text font-family="Helvetica" font-size="16" id="3" rect="(1243.0, 870.0, 340.0, 59.0)">Dejittered + IIR 3rd order, [0.75, 5], EEG</text> <text font-family="Helvetica" font-size="16" id="3" rect="(1243.0, 870.0, 340.0, 59.0)">Dejittered + IIR 3rd order, [0.75, 5], EEG</text>
<text font-family="Helvetica" font-size="16" id="4" rect="(166.0, 1505.0, 367.0, 186.0)">IPDKNOB</text>
</annotations> </annotations>
<thumbnail /> <thumbnail />
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...@@ -3670,7 +3708,7 @@ FgAAAHVzZV9udW1weV9vcHRpbWl6YXRpb25xJIl1Lg== ...@@ -3670,7 +3708,7 @@ FgAAAHVzZV9udW1weV9vcHRpbWl6YXRpb25xJIl1Lg==
"value": false "value": false
} }
}, },
"uuid": "9b4d59e1-3131-459c-847c-e177e0a9b53d" "uuid": "55165a73-d66a-4ace-9af2-db56c0384fe0"
}, },
"node9": { "node9": {
"class": "ConstantString", "class": "ConstantString",
...@@ -3692,7 +3730,7 @@ FgAAAHVzZV9udW1weV9vcHRpbWl6YXRpb25xJIl1Lg== ...@@ -3692,7 +3730,7 @@ FgAAAHVzZV9udW1weV9vcHRpbWl6YXRpb25xJIl1Lg==
"value": "C:/Users/vizlab_stud/idatt2900_gr92/neuropype-pipeline/ERPSpellerData" "value": "C:/Users/vizlab_stud/idatt2900_gr92/neuropype-pipeline/ERPSpellerData"
} }
}, },
"uuid": "aabfa6bb-56b6-47e1-9627-2fe348bcaa1e" "uuid": "bce3f0d2-2dba-4108-91a4-4797b26e1c99"
} }
}, },
"version": 1.1 "version": 1.1
......
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